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New insight into how the fruit fly brain creates spatial representations that support navigation

New insight into how the fruit fly brain creates spatial representations that support navigation
a, HD cells (EPG neurons) form a ring attractor network in the EB. Their axons project to the PB, where they form two linearized topographic maps of HD. b, The position of the EPG activity bump is influenced by ER neurons that encode the positions of visual HD cues or the direction of the wind. ER neurons are inhibitory and the most active ER neurons push the bump to the location where their inhibitory output is minimal. ER → EPG connections are anatomically all-to-all but their weights are shaped by Hebbian plasticity at ER → EPG synapses, such that each ER neuron generally makes functional synapses onto only a subset of EPG neurons. c, Schematic ER → EPG weights. Given a single visual cue and a steady wind direction, associative LTD is predicted to produce a diagonal notch of weak connections in each weight matrix. EPG neurons are sorted by their preferred HD. ER neurons are sorted by their preferred cue position. If the two cues are aligned in the simulated environment, Hebbian plasticity should align the notches. d, We hypothesize that cue salience and stability affect bump attractor dynamics and learning. e, We image EPG neurons in head-fixed flies walking on a spherical treadmill. As the fly turns on the spherical treadmill, the virtual environment rotates around the fly in the expected direction. Here, the environment contains a bright vertical stripe that serves as an HD cue. f, The bump of EPG activity tracks the fly’s fictive HD in a virtual reality environment, with a relatively constant angular offset. Bump position rotates clockwise in the EB (imaged from the posterior side of the head) as HD rotates counterclockwise; therefore, to account for this directionality, we always plot (−HD) to make it easier to visualize the correspondence between bump position and HD. Credit: Basnak et al. (Nature Human Behaviour, 2025).

To move around in their surroundings in meaningful and goal-directed ways, a skill known as navigation, humans and animals rely on a series of complex cognitive (i.e., mental) processes. Navigation is also supported by the so-called head direction system, a neural network that keeps track of the direction in which an animal is facing, acting as an “internal compass.”

This system forms a so-called topographic map, organizing neurons in ways that correspond to specific directions. While the contribution of the head direction system to navigation was explored in the past, its underpinning neural mechanisms have not yet been fully elucidated.

Researchers at Harvard Medical School carried out a new study investigating the processes through which the brains of Drosophila () represent head direction. Their findings, published in Nature Human Behavior, offer new insight into the processes through which the fruit fly brain creates representations of the environments they are moving in.

“Navigation requires us to take account of multiple spatial cues with varying levels of informativeness and learn their spatial relationships,” wrote Melanie A. Basnak, Anna Kutschireiter and their colleagues. “We investigate this process in the Drosophila head direction system, which functions as a ring attractor and a topographic map of head direction.”

To study the head direction system of fruit flies, Basnak, Kutschireiter and their colleagues used a combination of experimental techniques and technological tools. Firstly, they used a technique called population calcium imaging that can be used to track the activity of neurons.

Calcium imaging allows scientists to detect the influx of calcium ions that results from neurons firing electrical signals (i.e., action potentials).

In their experiment, the team simultaneously recorded the activity of entire neuron populations in the brains of fruit flies, as opposed to that of individual neurons. While they collected recordings using calcium imaging, the authors used a virtual reality set-up to control what the flies were seeing.

“Using population calcium imaging and multimodal virtual reality environments, we show that increasing cue informativeness improves encoding accuracy and produces a narrower and higher bump of activity,” wrote Basnak, Kutschireiter and their colleagues.

“When cues conflict, the more informative cue exerts more weight. A familiar cue is weighted more heavily and used to guide the remapping of a less familiar cue. When a cue is less informative, it is remapped more readily in response to cue conflict. All these results can be explained by an attractor model with plastic sensory synapses.”

The researchers found that when representing an environment, the brains of flies appear to give more “weight” to familiar cues and tend to adjust cues that are less familiar and thus deemed less “reliable.” Notably, they also observed in the navigation behavior of the flies they examined.

In their paper, the researchers introduce a model network that could explain their findings, which is rooted in a previously introduced model (i.e., the ring attractor model). In the future, their work could help to improve existing models of spatial navigation, while also potentially informing the development of bio-inspired robots and AI systems.

“Mechanistically, our results can be explained by a ring attractor model with a high rate of synaptic modification at sensory synapses onto HD cells,” they wrote.

“Conceptually, our findings show how continuous synaptic plasticity allows ongoing spatial learning and inference in a dynamic environment, albeit at the cost of reducing the stability of the system’s representational coordinate frame. Thus, our results highlight the fundamental tradeoff between stability and flexibility in the brain’s navigational centers.”

Written for you by our author Ingrid Fadelli, edited by Sadie Harley, and fact-checked and reviewed by Robert Egan—this article is the result of careful human work. We rely on readers like you to keep independent science journalism alive.
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More information:
Melanie A. Basnak et al, Multimodal cue integration and learning in a neural representation of head direction, Nature Neuroscience (2025). DOI: 10.1038/s41593-024-01823-z.

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New insight into how the fruit fly brain creates spatial representations that support navigation (2025, August 26)
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